Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs28393498 chr1:896476 A/G 0.000149 109 0 34.5 15.23 KM Plot
LAML rs28428505 chr11:133814468 C/T 1.58E-9 111 13.1 17.82 0.52 KM Plot
LAML rs28478453 chr19:19531175 C/G 0.000158 111 16.23 12.17 0 KM Plot
LAML rs28495071 chr2:1887894 T/C 0.000152 109 13.2 16.23 0 KM Plot
LAML rs28512382 chr10:1092195 G/C 1.67E-5 111 13.2 20.83 2.55 KM Plot
LAML rs28517514 chr14:90788709 G/A 6.91E-6 111 12.17 21.37 1.03 KM Plot
LAML rs28517794 chr7:142835010 A/G 3.98E-5 110 16.3 8.1 0 KM Plot
LAML rs2856553 chr16:16353166 A/G 0.000144 111 16.77 11.15 0 KM Plot
LAML rs28592869 chr13:111033568 A/G 9.61E-5 110 13.1 20.85 0 KM Plot
LAML rs2861419 chr19:12602017 C/G 0.000142 111 7.13 21.27 13.1 KM Plot
LAML rs2862168 chr19:12588380 G/A 5.31E-6 110 5.62 22.83 12.65 KM Plot
LAML rs2862169 chr19:12568344 G/T 1.05E-5 111 6.63 21.82 13.1 KM Plot
LAML rs28700176 chr19:48267001 G/C 1.28E-8 106 5.6 21.87 12.68 KM Plot
LAML rs28729565 chr8:8551896 G/C 5.21E-5 111 17.28 16.23 4.08 KM Plot
LAML rs28786675 chr11:93160974 C/G 6.43E-5 109 6.13 14.13 16.3 KM Plot